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Interactive SBML Simulation Tool  v.1.0

This project hosts the 'Simulation Tool', an extensible, interactive environment for carrying out simulation experiments of SBML models.

RoadRunner: SBML Simulation Environment  v.9.10

RoadRunner represents a state-of-the-art simulation library for SBML models.





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Systems Biology Markup Language (SBML)  v.1

The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology.

SBML Reaction Finder  v.1.0

Easily find and extract specific chemical reactions from the BioModels database.

LibSBML  v.4.0.1

LibSBML is a free, open-source programming library to help you read, write, manipulate, translate, and validate SBML files and data streams. It is not an application itself, but rather a library you can embed in your own applications.

CellDesigner  v.4.1.0.6

CellDesigner is a structured diagram editor for drawing gene-regulatory and biochemical networks.

Gepasi  v.3 3

Gepasi is a software package for modeling biochemical systems.

SBMLToolbox  v.3. 1. 2002

SBMLToolbox is built on top of libSBML and provides a set of basic functions allowing SBML models to be used in MATLAB.

SBMLforge  v.rc

SBMLforge is a tool that enables the user to convert and merge KEGG metabolic and signaling pathways (KGML format) to create a single SBML pathway model.

SemanticSBML  v.1.0

Create, check, annotate, merge, diff, split SBML (System Biology Markup Lanugage) documents.

MIMTool  v.1.0.0

Draw Molecular Interaction Maps fast and easy. MIMTool help you draw Molecular Interaction Maps in MIM notation. It contributes a novel semi-automatic orthogonal drawing engine which minimizes bends and crossovers when edges are drawn. As output, it

Cain  v.1.10

Cain performs stochastic and deterministic simulations of chemical reactions.

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